bdgenomics.workflows Documentation

bdgenomics.workflows is an open-source collection of workflows for running Big Data Genomics tools.

Check out our website for a comprehensive list of Big Data Genomics tools. Feel free to also join us on GitHub and Gitter. bdgenomics.workflows is built on top of the Toil workflow management system and is designed to run both locally and on the Amazon Web Services cloud.

Getting Started

• Installation
  • Basic Installation
  • Building from source

Running Workflows

• Overview
  • Calling CNVs with DECA
  • Preparing to Run on AWS

• Index
• Search Page